Documentation for Evolving Niches

This (very incomplete) documentation covers the code used for a series of experiments in artificial life and soundscape formation over the course of my PhD. The results of the experiments are publishd in two papers:

• Kadish, D., Risi, S., & Beloff, L. (2019). An artificial life approach to studying niche differentiation in soundscape ecology. The 2019 Conference on Artificial Life, 52–59. https://doi.org/10.1162/isal_a_00140

• Kadish, D., & Risi, S. (2020). Adapting to a changing environment: Simulating the effects of noise on animal sonification. The 2020 Conference on Artificial Life, 687–695. https://doi.org/10.1162/isal_a_00320

This code covers the experimental runs and portions of the analysis that was done in creating the paper.

Contents:

• API
  • Analysis
  • Dataframe
  • Evaluators
  • Genome
  • Messaging
  • Noise
  • Parallel
  • Population
  • Species
  • Stats
  • Visualize
• Experiments
  • One Species With Noise
  • Evolve Multi Species
• Scripts
  • fix_generations.py
  • run_calculations.py
  • run_renumber.py
• Examples
  • Experiment
  • Config
  • Experiment Analysis using a Jupyter Notebook
  • SLURM Job - Experiment
  • SLURM Job - Combine Dataframes

Indices and tables

• Index

• Module Index

• Search Page